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Some recent highlights
Some classics
View
my collection, "My Bibliography" from NCBI
|
Some
recent highlights:
(top)
Paeschke, K., Bochman, M.L., Garcia, P.D., Cejka, P.,
Friedman, K.L.,
Kowalczykowski, S.C.,
and Zakian, V.A. (2013)
Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Nature,
497, 458-62. (published online May 8,
2013 as doi: 10.1038/nature12149). PMID: 23657261; PMCID:
PMC3680789.
[Abstract]
[Full
Text] [PDF]
[Supplementary
Information]
(see Innovations Report:
Stability for the genome
[PDF])
(see Nature New & Views:
DNA replication: Driving past four-stranded snags
[PDF])
(see NSF
Science360 New Service
[Full Text] [PDF])
(see Universität Würzburg:
Stability for the genome
[PDF])
Cannavo, E.,
Cejka, P., and
Kowalczykowski, S.C.
(2013)
Relationship of DNA degradation by Saccharomyces cerevisiae Exonuclease 1 and
its stimulation by RPA and Mre11-Rad50-Xrs2 to DNA end resection.
Proc. Natl. Acad. Sci. U.S.A., 109 (published online April 15, 2013 as
doi: 10.1073/pnas.1305166110). PMID: 23589858, PMCID:
PMC3645542.
[Abstract]
[Full
Text]
[PDF]
[Supporting Information]
Jensen, R.B.,
Ozes, A.,
Kim, T., Estep, A., and
Kowalczykowski, S.C.
(2013)
BRCA2 is epistatic to the RAD51 paralogs in response to DNA damage.
DNA Repair, 12, 306-311.
PMID: 23384538; PMCID: PMC3602134.
[Abstract]
[Full Text]
[PDF]
[Supplementary Figure I]
[Supplementary Figure II]
[Supplementary Figure III]
Forget, A.L.,
Dombrowski, C.C.,
Amitani, I.,
and Kowalczykowski, S.C.
(2013)
Exploring protein-DNA interactions in 3D using in situ construction,
manipulation, and visualization of individual DNA dumbbells with optical traps, microfluidics, and fluorescence microscopy.
Nature Protocols, 8, 525-538. PMID:
23411634; PMCID: PMC4329291. [Abstract]
[Full Text]
[PDF]
[Supplementary Figure 1]
Bell, J.C.,
Plank, J.L.,
Dombrowski, C.C., and
Kowalczykowski, S.C.
(2012)
Direct imaging of RecA nucleation and growth on single molecules of SSB-coated
ssDNA.
Nature, 491, 274-278 (published online 24 October 2012 as
doi: 10.1038/nature11598). PMID:
23103864;
PMCID: PMC4112059. [Abstract]
[Full Text]
[PDF]
[Supplementary Information]
[Video 1: Direct imaging of nucleation and
growth of RecA on SSB-coated ssDNA]
[Video 2: Optical trapping and manipulation
of single molecules of gapped DNA for direct imaging of RecAf
filament assembly]
(see Nature News & Views:
A glimpse of molecular competition
[PDF])
(see Phys.org News:
Single-DNA images give clues to breast cancer
[PDF])
(see Scientific Blogging:
Rad51: Watching single strands of
DNA being prepped for repair could help fight breast cancer
[Printable]
[PDF])
(see UC Davis News and Information:
Single-DNA images give clues to
breast cancer
[Video]
[PDF])
Cejka, P.,
Plank, J.L.,
Dombrowski, C.C., and
Kowalczykowski, S.C.
(2012)
Decatenation of DNA by the S. cerevisiae Sgs1–Top3–Rmi1 and RPA
complex: A mechanism for disentangling chromosomes.
Mol. Cell, 47, 886-896 (published online August 15, 2012).
PMID:
22885009; PMCID: PMC3462259
[Abstract]
[Full Text] [PDF]
[Supplemental Information]
Handa, N.,
Yang, L.,
Dillingham, M. S., Kobayashi, I., Wigley, D.B., and
Kowalczykowski, S.C.
(2012)
Molecular determinants responsible
for recognition of the single-stranded DNA regulatory sequence, χ, by RecBCD
enzyme.
Proc. Natl. Acad. Sci. U.S.A., 109, 8901-8906 (published online 17 May
2012, 10.1073/pnas.1206076109).
PMID: 22603794; PMCID: PMC3384139
[Abstract]
[Full
Text]
[PDF]
[Supporting Information]
Yang, L.,
Handa, N.,
Liu, B.,
Dillingham, M. S., Wigley, D.B., and
Kowalczykowski, S.C.
(2012)
Alteration of χ recognition by
RecBCD reveals a regulated molecular latch and suggests a channel-bypass
mechanism for biological control.
Proc. Natl. Acad. Sci. U.S.A., 109, 8907-8912 (published online 17 May
2012, 10.1073/pnas.1206081109). PMID: 22603793;
PMCID:
PMC3384165
[Abstract]
[Full Text]
[PDF]
[Supporting Information]
Forget, A.L. and
Kowalczykowski, S.C.
(2012)
Single-molecule imaging of DNA pairing by RecA reveals a
three-dimensional
homology search.
Nature, 482, 423–427 (published online February 8,
2012, doi:10.1038/nature10782). PMID: 22318518; PMCID: PMC3288143
[Abstract] [Full Text]
[PDF]
[Supplementary Information]
[Supplementary Movie 1]
[Supplementary Movie 2]
[Supplementary Movie 3]
(see Biocompare, Life Sciences Articles, News:
How DNA finds its match
[PDF])
(see biotic-blog:
How DNA finds its match
[PDF])
(see California Aggie:
Protein plays DNA matchmaker role
[PDF])
(see Cancer-z blogspot:
How
DNA finds its match
[PDF])
(see Cell.com News:
UC Davis study shows how DNA finds its match
[PDF])
(see Crop Biotech Update:
How DNA finds its match
[PDF])
(see Current Biology Dispatch:
Homologous Recombination: How RecA Finds the Perfect Partner
[PDF])
(see EurekAlert:
How
DNA finds its match
[PDF])
(see InvestigaMedicina.com:
El proceso de recombinación
ha sido una incógnita desde el descubrimiento del ADN
[PDF])
(see National Cancer Institute News:
UC Davis study shows how DNA finds its match
[PDF])
(see Nikon Instruments Research Papers:
New insights into DNA repair
[PDF])
(see Phys.Org News:
Study shows how DNA finds its match
[PDF])
(see ScienceDaily:
How DNA
finds it match
[PDF])
(see UC Davis News and Information:
How DNA
finds its match
[PDF])
(see YouTube video: Scientists show DNA matchup
[Video])
Nimonkar, A.V., Genschel, J., Kinoshita, E., Polaczek, P., Campbell, J.L.,
Wyman, C., Modrich, P., and
Kowalczykowski, S.C.
(2011)
BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection
machineries for human DNA break repair.
Genes & Dev.,
25, 350-362. PMID: 21325134; PMCID: PMC3042158.
[Abstract]
[Full Text]
[PDF]
[Supplemental Material]
Carreira, A. and
Kowalczykowski, S.C.
(2011)
Two classes of BRC repeats in BRCA2 promote RAD51 nucleoprotein filament
function by distinct mechanisms.
Proc. Natl. Acad. Sci. U.S.A., 108, 10448-10453 (published online
June 13, 2011, doi: 10.1073/pnas.1106971108). PMID: 21670257; PMCID: PMC3127913
[Abstract] [Full Text]
[PDF]
[Supporting Information]
Cejka, P.,
Plank, J.L., Bachrati, C.Z., Hickson, I.D., and
Kowalczykowski, S.C.
(2010)
Rmi1 stimulates decatenation of double Holliday junctions during dissolution
by Sgs1-Top3.
Nature Struct. Mol. Biol., 17, 1377-1382 (published online
October 10, 2010; doi: 10.1038/nsmb.1919). PMID: 20935631; PMCID: PMC2988882
[Abstract]
[Full Text]
[PDF]
[Supplementary Material]
(see California Aggie:
DNA separates like a magician's rings
[PDF])
(see CheckOrphan, Research News:
DNA and the 'magic rings' trick
[PDF])
(see Davis Enterprise:
Study shows DNA acts like a 'magic rings' trick
[PDF])
(see Healthcanal:
DNA and the 'magic rings' trick
[PDF])
(see PhysOrg.com news:
DNA and the 'magic rings'
trick
[PDF])
(see UC Davis Comprehensive Cancer Center:
DNA and the
'magic rings' trick
[PDF])
(see UC Davis Health System:
DNA and the
'magic rings' trick
[PDF])
(see UC Davis News and Information:
DNA and
the 'magic rings' trick
[Printable]
[PDF])
(see UC Newsroom:
Genetic magic
trick may hold clues to Bloom's syndrome
[PDF])
Jensen, R.B.,
Carreira, A., and
Kowalczykowski, S.C.
(2010)
Purified human BRCA2 stimulates RAD51-mediated recombination.
Nature, 467, 678-683 (published online: August 22,
2010, doi: 10.1038/nature09399). PMID: 20729832; PMCID: PMC2952063
[Abstract] [Full Text] [PDF]
[Supplementary
Information]
(see UC Davis interview:
[Video-Flash]
[Video-MPEG4])
(see Nature News & Views:
DNA
Repair: A protein giant in its entirety [PDF])
(see Nature News:
Breast
cancer protein is finally purified
Latest News
[PDF])
(see American Cancer Society News:
New finding may unlock secrets of BRCA mutations
[PDF])
(see Biocompare, Life Sciences Articles, News:
Protein made by breast cancer gene purified
[PDF])
(see Biomedical Beat - National Institute of General Medical Sciences:
BRCA2 Breakthrough
News
[PDF])
(see Bionity.com:
Protein made by breast cancer gene purified
[PDF])
(see BioTechniques:
New gels shed light on cancer-related protein
[PDF])
(see Congressionally Directed Medical Research Programs (CDMRP), Breast
Cancer Research Highlights:
Successful isolation of BRCA2 (breast cancer type 2 susceptibility protein) and
elucidation of its mechanistic functions underlying breast cancer tumorigenesis
[PDF])
(see Davis Enterprise: Scientists dig into breast cancer origins
[PDF])
(see Deutsches Ärzteblatt:
Brustkrebs-Protein im
Labor hergestellt
[PDF])
(see e! Science News:
Protein made by breast cancer gene purified
[PDF])
(see ebiotrade:
"Nature": successfully isolated and purified human lung cancer gene BRCA2
protein
[PDF])
(see Eurekalert.org:
Protein made by breast cancer gene purified
[PDF])
(see GENNewsHighlights:
Researchers succeed in purifying protein expressed by BRCA2
[PDF])
(see GenomeWeb:
The elusive
protein, found
[PDF])
(see Guttenberg Municipal Hospital, HealthDay Daily Newsfeed:
Inner workings of gene tied to breast, ovarian cancer revealed
[PDF])
(see Higher Colleges of Technology, HCT Libraries:
BRCA2, purified, reveals some of its secrets
[PDF])
(see The Hindu:
Protein made by breast cancer gene 'purified'
[PDF])
(see Innovations Report:
Protein made by breast cancer gene purified
[PDF])
(see Journal of the National Cancer Institute:
BRCA2,
purified, reveals some of its secrets
[PDF])
(see Justmeans:
New finding may unlock secrets of BRCA mutations
[PDF])
(see Lahey Hospital and Medical Center, HealthDay News:
Inner workings of gene tied to breast, ovarian cancer revealed
[PDF])
(see Mammary Cell News:
Breast cancer protein is finally purified
[PDF])
(see MedGuru:
Pure form of tumor protein extracted successfully
[PDF])
(see Medical News Today:
Purification of
protein made by breast cancer gene
[PDF])
(see medwireNews:
Purification of BRCA2 protein allows understanding of its role in DNA repair
[PDF])
(see ModernMedicine:
Researchers isolate BRCA2 protein for first time
[PDF])
(see MSN Health and Fitness: Inner workings of
gene tied to breast, ovarian cancer revealed
[PDF])
(see Natureasia.com:
BRCA2
protein characterized
[PDF])
(see News, Chauthi Duniya:
Breast-cancer protein purified
[PDF])
(see NewScientist Health:
Fundamental breast and ovarian cancer protein isolated
[PDF])
(see Pharmaceutical Online:
Protein made by breast cancer gene purified
[PDF])
(see Santa Maria Law:
Breast
cancer research
[PDF])
(see Science Codex:
Protein made by breast cancer gene purified
[PDF])
(see ScienceDaily:
Protein
made by breast cancer gene purified
[PDF])
(see Softpedia News:
Breast cancer protein scrutinized
[PDF])
(see Synthesis, Fall/Winter 2010:
Protein made by breast cancer gene purified
[PDF])
(see Synthesis, Spring/Summer 2011:
Solving a genetic puzzle: Major findings open doors in DNA repair research
[PDF])
(see USNews Health:
Inner workings of gene tied to breast, ovarian cancer revealed
[PDF])
(see UC Davis Health System News:
Protein made
by breast cancer gene purified
[PDF])
(see UC Davis News & Information:
Protein made
by breast cancer gene purified
[PDF]
[printable])
(see WSFA 12 News Montgomery, AL: Inner workings of gene tied to
breast, ovarian cancer revealed
[PDF])
(see Yahoo! Movies India:
Breast-cancer protein purified
[PDF])
Cejka, P.,
Cannavo, E., Polaczek, P., Masuda-Sasa, T., Pokharel, S., Campbell,
J.L., and Kowalczykowski, S.C.
(2010)
DNA end resection by Dna2-Sgs1-RPA and its stimulation by Top3-Rmi1 and
Mre11-Rad50-Xrs2.
Nature, 467, 112-116 (doi:
10.1038/nature09355). PMID: 20811461; PMCID: PMC3089589
[Abstract] [Full Text]
[PDF]
[Supplementary Information]
(see Egghead blog about research at UC
Davis:
DNA repair machine on the bench
[PDF])
Amitani,
I., Liu, B.,
Dombrowski, C.C., Baskin, R.J., and
Kowalczykowski, S.C. (2010).
Watching individual proteins acting on single molecules of DNA.
In: Single Molecule Tools: Fluorescence Based Approaches, Part A,
Methods Enzymol., 472, Nils G. Walters, editor, Burlington: Academic
Press, 261-291
ISBN:
978-0-12-374954-3; doi: 10.1016/S0076-6879(10)72007-3. PMID:
20580968; PMCID: PMC3119597
[Abstract] [Full Text] [PDF]
Hilario, J.,
Amitani, I., Baskin, R.J., and
Kowalczykowski,
S.C.
(2009) Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA
molecules. Proc. Natl. Acad. Sci. U.S.A., 106,
361-368 (published online January 2, 2009, doi: 10.1073/pnas.0811965106.) PMID:
19122145; PMCID: PMC2613362
[Abstract]
[Full Text] [PDF]
[Supporting Information]
[Movie 1]
[Movie 2]
[Movie 3]
(see About Medicine:
Fluorescent microscopy captures the repair protein Rad51 as it assembles into a
filament on DNA
[PDF])
(see Biocompare News: Human DNA repair process
recorded in action
[PDF])
(see Biology News Net:
Human DNA repair process recorded in action
[PDF])
(see Biophotonics:
Mending broken DNA
[PDF]) (see e! Science News:
Human DNA repair process recorded in action
[PDF])
(see EurekAlert:
Human DNA repair process recorded in action
[PDF])
(see Insciences Organisation:
Human DNA repair
process recorded in action
[PDF]) (see Machines Like Us, News:
Human DNA repair process recorded in action
[PDF]) (see
MacNewsWorld: EurekAlert: Human DNA repair process recorded in
action
[PDF])
(see Medical News Today:
Fluorescent
microscopy captures the repair protein Rad51 as it assembles into a filament on
DNA
[PDF])
(see Newsguide.us: Human DNA repair process recorded in action
[PDF])
(see Newsweek, National News: Human DNA repair process recorded in
action (Video)
[PDF])
(see Overwhelming Evidence: Human DNA repair process video - by
chance?
[PDF])
(see Phys.org/News: Human
DNA repair process recorded in action (Video)
[PDF])
(see ScienceBlog:
Human DNA repair process recorded in action
[PDF]) (see Science Codex:
Human DNA repair process recorded in action
[PDF]) (see
Science Daily:
Human
DNA repair process recorded in action
[PDF])
(see ScienceMode.com: Human DNA repair process recorded in action
[PDF])
(see The Sensuous Curmudgeon:
Human DNA repair process recorded
[PDF]) (see UCDavis News and Information:
Human DNA
repair process recorded in action
Caught in the act:
Our DNA under repair [Video]
[Printable])
(see Uncommon Descent:
Human DNA repair process video - by chance?
[PDF])
Nimonkar, A.V.,
Sica, R.A., and
Kowalczykowski,
S.C.
(2009)
Rad52 promotes second-end DNA capture in double-stranded break repair to form
complement-stabilized joint molecules.
Proc. Natl. Acad. Sci. U.S.A., 106,
3077-3082 (published
online February 9, 2009, doi:10.1073/pnas.0813247106).
PMID: 19204284; PMCID: PMC2651264
[Abstract]
[Full Text] [PDF]
[Supporting Information]
Carreira, A.,
Hilario, J.,
Amitani, I., Baskin, R.J., Shivji, M.K.K., Venkitaraman, A.R., and
Kowalczykowski,
S.C.
(2009)
The BRC repeats of BRCA2 modulate the DNA-binding selectivity of RAD51.
Cell, 136,
1032-1043,
(doi:10.1016/j.cell.2009.02.019). PMID: 19303847;
PMCID: PMC2669112
[Abstract]
[Full Text] [PDF]
[Supplemental Data]
(see Cell, In this Issue:
BRCA2 Focuses RAD51 for Repair
[PDF])
Handa, N.,
Morimatsu, K., Lovett, S.T., and
Kowalczykowski,
S.C.
(2009)
Reconstitution of initial steps of dsDNA break repair by the RecF
pathway of E. coli.
Genes & Dev., 23, 1234-1245. PMID:
19451222; PMCID: PMC2685532
[Abstract] [Full Text]
[PDF]
[Supplemental Material]
(see Current Biology Dispatch:
DNA
Repair: Common Approaches to Fixing Double-Strand Breaks
[PDF])
Nimonkar, A.V.,
Özsoy, A.Z., Genschel, J., Modrich, P., and
Kowalczykowski,
S.C.
(2008)
Human exonuclease 1 and BLM helicase interact to resect DNA and initiate DNA
repair.
Proc. Natl. Acad. Sci. U.S.A., 105,
16906-16911
(published
online
October 29, 2008, as doi: 10.1073/pnas.0809380105).
PMID: 18971343; PMCID: PMC2579351
[Abstract]
[Full Text]
[PDF]
[Supporting Information]
Kowalczykowski,
S.C.
(2008).
Structural biology: Snapshots of DNA repair.
Nature,
453,
463-466 (published online May 21, 2008 as doi:10.1038/453463a. PMID:
18497811. [Full Text] [PDF]
Spies, M.,
Amitani,
I.,
Baskin, R.J., and
Kowalczykowski,
S.C.
(2007)
RecBCD enzyme switches lead motor subunits in response to
c-recognition.
Cell, 131, 16, 694-705
(doi:10.1016/j.cell.2007.9.023). PMID: 18022364. PMCID: PMC2151923.
[Abstract]
[Full
Text] [PDF] [Supplemental
Data]
(see Cell "RecBCD:
The Supercar of DNA Repair"
[PDF])
(see Egghead Blog about research at UC Davis:
A DNA machine running on two engines
[PDF])
Spies, M. and
Kowalczykowski,
S.C.
(2006)
The RecA-binding locus of RecBCD enzyme defines a generalized domain
for recruitment of DNA strand exchange proteins.
Mol. Cell,
21,
573-580. PMID: 16483938.
[Abstract]
[Full
Text] [PDF]
[Supplemental Data]
Galletto,
R.,
Amitani, I.,
Baskin,
R.J.,
and
Kowalczykowski,
S.C.
(2006)
Direct observation of individual RecA filaments assembling on single
DNA molecules. Nature,
443,
875-878.
PMID: 16988658.
[Abstract] [Full
Text] [PDF]
[Supplementary
Information]
(see
ACS Chemical Biology
Spotlight
Filaments
under the flashlight [PDF])
(see Bio.com
Watching DNA repair in real time [PDF])
(see EMBO meeting report:
How to
exchange your partner
[PDF])
(see
MedicalNewsToday.com Direct
observations of DNA are giving new insights into how genetic
material is copies and repaired
[PDF])
(see
News-Medical.net
Direct
observations of DNA provides new insights into how genetic material is
copied and repaired [PDF])
(see
PhysOrg.com
Watching
DNA repair in real time [PDF])
(see
nnseek.com Watching
DNA repair in real time [PDF])
(see
ScienceDaily.com Watching
DNA repair in real time [PDF])
(see Structure Preview:
RecA Assembly, One Molecule at a Time
[PDF])
(see
UC Davis News and Information
Watching DNA repair in real time [PDF]
[HTML]) |
|
Some classics:
(top)
Handa, N.,
Bianco, P.R.,
Baskin, R.J.,
and
Kowalczykowski, S.C.
(2005)
Direct visualization of RecBCD movement reveals co-translocation of the RecD
motor after c-recognition.
Mol. Cell,
17,
745-750. PMID: 15749023.
[Abstract]
[Full
Text]
[PDF] [Supplemental
Data] [Movie 1
- Chi0] [Movie 2 - Chi+]
Singleton, M. R.,
Dillingham, M.S., Gaudier, M.,
Kowalczykowski, S.C., and
Wigley, D. B. (2004)
Crystal structure of RecBCD reveals a machine for processing DNA breaks.
Nature,
432,
187-193. PMID:
15538360.
[Abstract]
[Full Text] [PDF]
(see News & Views [Full
Text] [PDF])
(see Nature "Highlights"
[Full
Text])
Veaute, X., Jeusset,
J., Soustelle, C.,
Kowalczykowski, S.C.
, Le Cam, E., and Fabre, F. (2003)
The Srs2 helicase prevents homologous recombination by disrupting Rad51
nucleofilaments.
Nature, 423, 309-312. PMID: 12748645.
[Abstract]
[Full
Text] [PDF]
(see News & Views in
Nature 423,
234 - 235 (2003); doi:10.1038/423234a [Full
Text] [PDF])
(Recommended
paper by the Faculty of 1000:
#1 [Abstract] [PDF];
#2
[Abstract] [PDF])
Morimatsu, K. and
Kowalczykowski, S.C.
(2003).
RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand
exchange: A universal step of recombinational repair.
Mol. Cell, 11, 1337-1347. PMID:
12769856.
[Abstract]
[Full
Text] [PDF]
Alexeev, A.,
Mazin, A.V., and
Kowalczykowski, S.C.
(2003)
Rad54 protein possesses chromatin remodeling activity stimulated by the
Rad51-ssDNA nucleoprotein filament.
Nature Struct. Biol., 10, 182-186 (published 10 February 2003 as
doi.10.1038/nsb901). PMID:
12577053.
[Abstract] [Full Text]
[PDF]
[Online cover]
(see Highlight in Nature Reviews Molecular
Cell Biology 4, 261 (2003); doi:10.1038/nrm1089.
[Full Text]
[PDF])
(twice
Recommended
paper by the Faculty of 1000 [Full Text])
(see News &
Information
at UC Davis News Service
[Full Text]
[Printable Version])
(see International Rett Syndrome Foundation Newsletter [PDF])
Spies, M.,
Bianco, P.R., Dillingham, M.S.,
Handa, N.,
Baskin, R.J.,
and
Kowalczykowski, S.C.
(2003)
A molecular throttle: The recombination hotspot
c
controls DNA translocation by the RecBCD helicase.
Cell, 114, 647-654. PMID:
13678587.
[Abstract]
[Full
Text] [PDF]
[Featured Article]
[Supplemental Table S1]
[Supplemental Table S2]
[Supplemental Table S3]
[Supplemental Movie S1]
[Supplemental Movie S2]
[Supplemental Movie S3]
(see
News & Features at
Bio.com
[Full Text]
[PDF])
(see News &
Information
at UC Davis News Service
[Full Text]
[Printable Version])
(see
News &
Information
at UC Davis News Service
[Full Text]
[Printable Version])
Dillingham, M.S.,
Spies, M., and
Kowalczykowski, S.C.
(2003)
RecBCD enzyme is a bipolar DNA helicase.
Nature,
423, 893 - 897. PMID:
12815438.
[Abstract]
[Full
Text] [PDF]
[Supplementary Figure]
[Supplementary Figure Legend and Methods]
(see News & Views in
Nature Structural Biology 10, 499 -
500 (2003)
[Full
Text] [PDF])
(see Highlight in Nature Reviews Molecular
Cell Biology 4, 513 (2003);
doi:10.1038/nrm1162.
[Full Text]
[PDF])
(Must Read
paper by Faculty of 1000
[Full Text])
(see News &
Information
at UC Davis News Service
[Full Text]
[Printable Version])
Kantake, N.,
Madiraju, M.V.V.M.,
Sugiyama, T., and
Kowalczykowski, S.C.
(2002)
Escherichia coli RecO protein anneals ssDNA
complexed with its cognate ssDNA-binding protein: A common step in genetic
recombination.
Proc. Natl. Acad. Sci. USA, 99, 15327-15332 (published November 18,
2002, as 10.1073/pnas.252633399). PMID: 12438681; PMCID:
PMC137716.
[Abstract] [Full
Text] [PDF]
(Recommended
paper by Faculty of 1000
[Full Text])
Bianco, P.R., Brewer, L.R., Corzett, M., Balhorn,
R., Yeh,
Y., Kowalczykowski, S.C., and
Baskin, R.J. (2001).
Processive translocation
and DNA unwinding by individual RecBCD enzyme molecules.
Nature, 409,
374-378. PMID: 11201750.
[Abstract]
[Full
Text]
[PDF]
Movies!
37°C:
1
mM ATP
23°C:
1 mM ATP;
250
µM ATP #1;
250
µM ATP #2;
no ATP
(see
coverage in Biophotonics (2001) 8, 48-49
[TOC]
[PDF]
(see UC Davis Division of Biological Sciences Newsletter [PDF])
Press coverage:
Capitol
Public Radio
- January 17, 2001 - Full transcript
San Francisco
Chronicle - January 20, 2001 - excerpt
Full
article - "Watch DNA Unzip in Micromovie-Molecular action film highlights potential of
nanotechnology"
San Francisco
Chronicle - January 24, 2001 - excerpt
Full article: "A Little Spark Of Inspiration"
San Francisco Chronicle -
January 26, 2001 - excerpt
Full article: "Never Metatag We Didn't Like"
News &
Information
at UC Davis News Service
[Full Text]
Nanotech Dreams -
The
Scientist
16[5]:34, Mar.
4, 2002
- Excerpt
Full article
Davis Community
Television -
February 8, 2001
7:00 PM - "Get The Word Out." Double helix unwinds on camera. Stephen
Kowalczykowski interviewed by Jon Price. (Rerun on Tues Feb 13, 2001 at 7:30
PM). [VIDEO]
Mazin,
A.V., Bornarth, C.J., Solinger,
J.A., Heyer, W.-D.,
and
Kowalczykowski, S.C.
(2000).
Rad54 Protein is targeted to pairing loci by the Rad51 nucleoprotein
filament.
Mol. Cell,
6, 583–592.
PMID: 11030338.
[Abstract] [Full
Text] [PDF]
Mazin, A.V.,
Zaitseva,
E., Sung,
P., and
Kowalczykowski, S.C.
(2000).
Tailed duplex DNA is the preferred substrate for Rad51 protein-mediated
homologous pairing.
EMBO J., 19,
1148-1156. PMID:
10698955; PMCID: PMC305653.
[Abstract] [Full
Text] [PDF]
(see commentary in CHEMTRACTS-Biochemistry and Molecular Biology,
13, 415-423,
2000:
[Full Text]
[PDF]
Bianco, P.R. and Kowalczykowski, S.C.
(2000).
The translocation step size and mechanism of the RecBC helicase.
Nature,
405,
368-372. PMID: 10830968.
[Abstract] [Full
Text] [PDF]
(see Dispatch in Current Biology:
[Abstract]
[Full Text]
[PDF])
(see News &
Information
at UC Davis News Service
[Full Text]
[Printable Version])
(see Science
Blog [PDF])
Zaitsev, E.N. and
Kowalczykowski, S.C.
(2000).
A novel pairing process promoted by Escherichia
coli RecA protein: Inverse DNA and RNA strand exchange.
Genes
& Dev. 14, 740-749. PMID:
10733533; PMCID: PMC316457.
[Abstract]
[Full
Text] [PDF]
Harmon, F.G., DiGate, R.J., and
Kowalczykowski, S.C. (1999).
RecQ helicase and topoisomerase III comprise a novel DNA strand passage function:
a conserved mechanism for control of DNA recombination.
Mol. Cell, 3, 611-620. PMID: 10360177.
[Abstract] [Full Text]
[PDF]
(see Dispatch in Current Biology: [PDF])
Harmon, F.G. and
Kowalczykowski, S.C. (1998).
RecQ helicase, in concert with RecA, and SSB proteins, initiates and disrupts DNA
recombination.
Genes & Dev., 12, 1134-1144. PMID:
9553043; PMCID: PMC316708.
[Abstract] [Full
Text]
[PDF]
New, J.H., Sugiyama, T., Zaitseva, E., and
Kowalczykowski, S.C. (1998).
Rad52 protein stimulates DNA strand exchange by Rad51 and replication protein A.
Nature, 391, 407-410. PMID: 9450760.
[Abstract]
[Full
Text] [PDF]
(see Nature News & Views:
[News&Views]
[N&V
PDF])
Sugiyama, T., New, J.H., and
Kowalczykowski, S.C. (1998).
DNA Annealing by Rad52 protein is stimulated by specific interaction with the
complex of replication protein A and single-stranded DNA.
Proc. Natl. Acad. Sci. USA, 95, 6049-6054.
PMID: 9600915; PMCID: PMC27583.
[Abstract] [Full
Text] [PDF]
Seitz, E.M., Brockman, J.P.,
Sandler, S.J., Clark, A.J., and
Kowalczykowski,
S.C. (1998).
RadA protein is an archaeal RecA protein homolog that catalyzes DNA strand
exchange.
Genes & Dev., 12, 1248-1253. PMID:
9573041; PMCID: PMC316774.
[Abstract]
[Full
Text] [PDF]
[Genes &
Dev. cover] [Genes
& Dev. cover.jpeg]
Sugiyama, T.,
Zaitseva,
E.M., and Kowalczykowski, S.C. (1997).
A single-stranded DNA-binding protein is needed for efficient presynaptic complex
formation by the Saccharomyces cerevisiae Rad51 protein.
J. Biol. Chem., 272, 7940-7945.
PMID: 9065463.
[Abstract] [Full
Text] [PDF]
Anderson, D.G. and Kowalczykowski, S.C. (1997).
The translocating RecBCD enzyme stimulates recombination by directing RecA protein
onto ssDNA in a c-regulated manner.
Cell, 90, 77-86. PMID: 9230304.
[Abstract]
[Full
Text] [PDF]
(see Dispatch in Current Biology:
[Full Text] [PDF])
Anderson, D.G. and
Kowalczykowski, S.C. (1997).
The recombination hot spot chi
is a regulatory element that switches the polarity of DNA degradation by the
RecBCD enzyme.
Genes & Dev., 11, 571-581.
PMID: 9119222.
[Abstract]
[Full Text] [PDF]
Dixon, D.A. and
Kowalczykowski, S.C.(1993).
The recombination hotspot χ is a
regulatory sequence that acts by attenuating the nuclease activity of the E.
coli RecBCD enzyme.
Cell, 73, 87-96.
PMID: 8384931.
[Abstract]
[Full Text] [PDF]
Dixon, D.A. and
Kowalczykowski, S.C. (1991).
Homologous pairing in vitro stimulated by the recombination hotspot, Chi.
Cell, 66 361-371. PMID:
1855256. [Abstract]
[Full Text]
[PDF]
Menetski, J.P.,
Bear, D.G., and
Kowalczykowski, S.C. (1990).
Stable DNA heteroduplex formation by the Escherichia
coli RecA protein in the absence of ATP hydrolysis.
Proc. Natl.
Acad. Sci. U.S.A. 87, 21-25. PMID:
2404275; PMCID: PMC53191.
[Abstract]
[Full Text]
[PDF]
Roman, L.J. and
Kowalczykowski, S.C.
(1989).
Characterization of the helicase activity of the Escherichia coli
RecBCD
enzyme using a novel helicase assay.
Biochemistry 28, 2863-2873.
PMID: 2545238.
[Abstract]
[PDF]
Kowalczykowski, S.C. and Krupp, R.A. (1987).
Effects of the Escherichia coli SSB protein on the single-stranded
DNA-dependent ATPase activity of Escherichia coli RecA protein: Evidence that SSB
protein facilitates the binding of RecA protein to regions of secondary structure within
single-stranded DNA.
J. Mol. Biol. 193, 97-113. PMID:
2953903. [Abstract] [PDF]
Kowalczykowski, S.C., Clow, J.C., Somani, R., and Varghese, A.
(1987).
Effects of the Escherichia coli SSB protein on the binding of Escherichia
coli RecA protein to single-stranded DNA: Demonstration of competitive binding and the
lack of a specific protein-protein interaction.
J. Mol. Biol. 193, 81- 95. PMID:
3295259. [Abstract] [PDF]
Menetski, J.P. and
Kowalczykowski,
S.C. (1985).
Interaction of recA protein with single-stranded DNA: Quantitative aspects of
binding affinity modulation by nucleotide cofactors.
J. Mol. Biol. 181, 281-295.
PMID: 3981638.
[Abstract]
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